ProtParam

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Calculated physical and chemical protein parameters

SI Score
80/100
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What it does

ExPASy ProtParam calculates parameters for a UniProtKB entry or a supplied protein sequence.

ProtParam accepts one UniProtKB identifier or a raw single-letter protein sequence; spaces and numbers in raw input are ignored. Identifier input offers annotated chains/domains or start/end positions, with the whole sequence used when both boxes are empty. Results include molecular weight, theoretical pI, composition and derived indices. Post-translational modifications cannot be specified, and multimeric state is not inferred. The documentation's 280 nm extinction estimate gives separate fully oxidized/reduced-cysteine assumptions for proteins in water and warns of larger errors without tryptophan or with other absorbing chromophores. Its half-life estimate follows the N-terminal-residue rule for human, yeast and E. coli models. These are sequence-based predictions with stated model assumptions.

Strengths

  • UniProtKB and direct-sequence input
  • Several protein composition and property calculations

Best for

  • Reviewing calculated properties of a specified protein sequence

Sources